Phenotypic characterization of Indonesian Jambi buffalo in the highland and lowland areas using multivariate analysis

Panca Andes Hendrawan, Sony Hartono Wijaya, Cece Sumantri, Jakaria Jakaria

Abstract

Jambi buffaloes are extensively reared under a closed rearing system by smallholder farmers. This study aimed to analyze the phenotypic characteristics of buffaloes in Jambi Province, Indonesia, in the highlands and lowlands. A total of 160 buffaloes were used in this study, 53 heads (highland) and 107 heads (lowland). Descriptive analysis was used for qualitative data and analysis of variance, Duncan's Multiple Range Test, Pearson correlation, principal component analysis (PCA), discriminant analysis, and hierarchical cluster analysis (HCA) for quantitative data. The results showed a diversity of qualitative traits in both populations. Body morphometrics of highland buffaloes were significantly (p<0.05) greater than those of lowland buffaloes. Pearson correlation between body morphometrics and morphometric index showed correlation from low, medium to high. Highland buffaloes showed three principal components (PCs) based on body morphometrics, while lowland buffaloes showed two PCs. In both populations, the morphometric index determines four principal components. The discriminant analysis showed that about 48.09% of highland buffaloes and 51.92% of lowland buffaloes were characterized based on body morphometrics. Meanwhile, about 57.69% of highland buffaloes and 42.31% of lowland buffaloes were characterized based on morphometric indices. Based on hierarchical cluster analysis (HCA), Jambi buffalo can be classified into three clusters: The first cluster was Merangin; Kerinci was in the second cluster, and Tanjung Jabung Barat, Tebo, and Batanghari were in the third cluster.

Keywords

Buffalo; Body morphometric; Multivariate analysis; Phenotypic

References

Abdullah NA., Mutawalli, Ammar M, Sari M. 2024. Identification of quantitative and qualitative traits diversity in local buffalo in Nagan Raya District. Indones J Vet Sci [Internet]. 18(2):40–45. https://doi.org/10.21157/j.ked.hewan.v18i2.34229

Adebowale A, Soetan M, Adefabi A. 2023. Profile of morphological characters among male and female buffalo (Bubalus bubalis) populations in Kaliakah Village, Bali Province, Indonesia. Aceh J Anim Sci. 8(3):135–142. https://doi.org/10.13170/ajas.8.3.31935

A?yar O, T?r?nk C, Önder H, ?en U, Piwczy?ski D, Yavuz E. 2022. Use of multivariate adaptive regression splines algorithm to predict body weight from body measurements of Anatolian buffaloes in Türkiye. Animals. 12(21):1–9. https://doi.org/10.3390/ani12212923

Aierqing S, Nakagawa A, Ouchi Y, Bungo T. 2020. The effect of facial hair whorl position and raising environment on the temperament of the Chinese Yellow cattle in Shinjang Uyghur Aptonom Rayoni, China. J Adv Vet Anim Res. 7(3):477–481. https://doi.org/10.5455/javar.2020.g444

Alderson GL. 1999. The development of a system of linear measurements to provide an assessment of type and function of beef cattle. Anim Genet Resour Inf. 25:45–55.

Ali SS, Kuralkar S V., Kanadkhedkar HL, Bankar PS, Kataria RS, Vohra V. 2024. Discriminant analysis reveals differences in breed structure in river buffaloes of Maharashtra (India). Trop Anim Health Prod. 56(1):1–15. https://doi.org/10.1007/s11250-024-03885-4

Anggraeni A, Sumantri C, Praharani L, Dudi, Andreas E. 2011. Estimasi jarak genetik kerbau rawa lokal melalui pendekatan analisis morfologi. Jitv [Internet]. 16(3):199–210. http://repository.ipb.ac.id/handle/123456789/76567

Badan Standarisasi Nasional. Bibit kerbau - Bagian 1: Lumpur. 2011. [place unknown]. http://sispk.bsn.go.id/SNI/DetailSNI/8846

Barker JSF, Moore SS, Hetzel DJS, Evans D, Tan SG, Byrne K. 1997. Genetic diversity of Asian water buffalo ( Bubalus bubalis ): microsatellite variation and a compari- son with protein-coding loci. Anim Genet. 28(1):103–115. https://doi.org/10.1111/j.1365-2052.1997.00085.x

Bartlett MS. 1950. Tests of significance in factor analysis. Br J Psychol. 3:77–85.

Benerjee S, Ahmed BM, Tefere G. 2014. Studies on morphometrical traits of Boran bulls reared on two feedlots in Southern Ethiopia. Anim Genet Resour. 54:53–63. https://doi.org/doi:10.1017/S2078633614000095

Corp IBM. 2017. IBM SPSS Statistics for Windows.

Curaudeau M, Rozzi R, Hassanin A. 2021. The genome of the lowland anoa (Bubalus depressicornis) illuminates the origin of river and swamp buffalo. Mol Phylogenet Evol [Internet]. 161(March):107170. https://doi.org/10.1016/j.ympev.2021.107170

Dahiya SP, Kumar M, Dhillod S, Ratwan P. 2021. Principal component analysis of linear type traits to explain body conformation in Murrah buffaloes. Indian J Anim Sci. 90(11):1546–1550. https://doi.org/10.56093/ijans.v90i11.111569

Depison D, Putra WPB, Gushairiyanto G, Alwi Y, Suryani H. 2020. Morphometric characterization of Kacang goats raised in lowland and highland areas of Jambi Province, Indonesia. J Adv Vet Anim Res. 7(4):734–743. https://doi.org/10.5455/javar.2020.g475

Depison, Putra WPB, Alwi Y, Suryani H. 2021. Morphometrics Characterization of Thin-Tail Sheep in Lowland and Highland Areas. Trop Anim Sci J. 44(4):386–398. https://doi.org/https://doi.org/10.5398/tasj.2021.44.4.386

Depison, Putra WPB, Dika Irmaya H. 2022. Morphometric discrimination in Bali cattle (Bos javanicus) at two different altitude areas of Jambi province, Indonesia. Indian J Anim Sci. 92(2):222–225. https://doi.org/10.56093/ijans.v92i2.122097

Dudi, Sumantri C, Martojo H, Anang A. 2011. Keragaan Sifat Kualitatif dan Kuantitatif Kerbau Lokal di Propinsi Banten. J Ilmu Ternak. 11(2):61–67. https://doi.org/https://doi.org/10.24198/jit.v11i2.371

Encina A, Ligero M, Sánchez-Guerrero MJ, Rodríguez-Sainz de los Terreros A, Bartolomé E, Valera M. 2023. Phenotypic and Genetic Study of the Presence of Hair Whorls in Pura Raza Español Horses. Animals. 13(18):9–12. https://doi.org/10.3390/ani13182943

Erdiansyah E, Anggraeni A. 2008. Keragaman fenotipe dan pendugaan jarak genetik antara subpopulasi kerbau rawa lokal di Kabupaten Dompu, Nusa Tenggara Barat. Semin dan Lokakarya Nas Usaha Ternak Kerbau.:55–67.

Eriani K, Rahmi R, Jamil I, Rosnizar R, Azhar A. 2019. Body size characteristics and polymorphism in GH and GHRH genes of simeulue Buffalo of Aceh, Indonesia. Biodiversitas. 20(1):236–242. https://doi.org/10.13057/biodiv/d200127

FAO. 2012. Phenotypic characterization of animal genetic resources. Rome.

Kaiser HF. 1958. The varimax criterion for analytic rotation in factor analysis. Psychometrika. 23:187–200.

Karabu MI, Aku AS, Nafiu L ode. 2021. Penampilan Sifat-Sifat Kualitatif Kerbau Rawa di Kabupaten Konawe. J Ilm Peternak Halu Oleo. 3(2). https://doi.org/10.56625/jipho.v3i2.18029

Khan N, Khan S, Israr M, Hilal MG, Ibrahim MNM, Khan NA. 2022. Comparing Azikheli buffaloes with Nili Ravi buffaloes for morphometry, productivity and reproductivity. Pakistan J Agric Sci. 59(4):693–701. https://doi.org/10.21162/PAKJAS/22.1453

Khatke S, Mayekar A, Kadam N, Kokani D, Gavit M, Desai B. 2023. Morphological characterization of non-descript Buffalo in Konkan Region of Maharashtra State. Int J Vet Sci Anim Husb. 8(3):176–180. https://doi.org/10.22271/veterinary.2023.v8.i3c.539

Kocu O, Salundik S, Priyanto R, Prihantoro I. 2017. Produktivitas Sapi Bali di Lahan Pastura dan Perkebunan Kelapa Sawit di Kabupaten Keerom Provinsi Papua. J Ilmu Produksi dan Teknol Has Peternak. 5(3):110–116. https://doi.org/10.29244/jipthp.5.3.110-116

Komariah K, Sumantri S, Nuraini H, Nurdiati S, Mulatsih S. 2015. Performans Kerbau Lumpur dan Strategi Pengembangannya pada Daerah dengan Ketinggian Berbeda di Kabupaten Cianjur. J Vet. 16(4):606–615. https://doi.org/10.19087/jveteriner.2015.16.4.606

Krisnandi G, Rahmat D, Dudi. 2013. Identifikasi Sifat Kualitatif Dan Kuantitatif Kerbau Jantan Dewasa. J Chem Inf Model. 53(9):1689–1699.

Kurniadi MDK, Putri HM. 2021. Tradisi bantai adat: kearifan lokal menyambut bulan ramadhan masyarakat merangin jambi. J Lekt Keagamaan. 19(2):388–418. https://doi.org/10.31291/jlka.v19i2.961

Lan Q, Cao Z, Yang X, Gu Z. 2022. Physiological and Proteomic Responses of Dairy Buffalo to Heat Stress Induced by Different Altitudes. Metabolites. 12(10). https://doi.org/10.3390/metabo12100909

Liang D, Zhao P, Si J, Fang L, Pairo-Castineira E, Hu X, Xu Q, Hou Y, Gong Y, Liang Z, et al. 2021. Genomic Analysis Revealed a Convergent Evolution of LINE-1 in Coat Color: A Case Study in Water Buffaloes (Bubalus bubalis). Mol Biol Evol. 38(3):1122–1136. https://doi.org/10.1093/molbev/msaa279

Maleo DAB, Nascimento MDI, Santos DATL, Lima DGL, Araujo DTCF, Rios SRR, Couto GDA, Fraga BA. 2018. Body morphometric measurements in murrah crossbred buffaloes (Bubalus bubalis). J Appl Anim Res. 46(1):1307–1312. https://doi.org/10.1080/09712119.2018.1502669

Maulana T, Iskandar H, Said S, Gunawan A. 2023. The current status and potential development of genetic resources of indigenous toraya spotted buffalo in indonesia: a systematic review. World’s Vet J. 13(4):617–625. https://doi.org/10.54203/SCIL.2023.WVJ66

Murni D, Lestari U, Indriwati SE, Efendi A, Maryani N, Amin M. 2020. Morphometric diversity and phenotypic relationship among indigenous buffaloes of Banten, Indonesia. Biodiversitas. 21(3):933–940. https://doi.org/10.13057/biodiv/d210311

Nafiu LO, Asminaya NS. 2023. Characteristics the Backline and Unyeng-unyeng of Swamp Buffalo on Kabaena Island , Bombana Regency. Indones J Anim Agric Sci. 5(1):90–94.

Nafiu O., Saili T, Abadi M, Badaruddin R, Aba, AuzaA.F. 2023. External Genetic Characteristics of Swamp Buffalo Based on Sex and Age in South Konawe District. Int J Sci Res Sci Eng Technol. 10(6):301–310. https://doi.org/10.32628/ijsrset2310621

Nur AE, Nugroho H, Kuswati K. 2018. Karakteristik Fenotip Kerbau Rawa (B. bubalis carabenesis) di Wilayah Sentra Pengembangan Kerbau Desa Guosobokerto Kecamatan Welahan Kabupaten Jepara. J Ternak Trop. 19(2):156–166. https://doi.org/10.21776/ub.jtapro.2018.019.02.10

Paraguas AM, Cailipan TPC, Flores EB, Villamor LP. 2018. Morphology and phylogeny of swamp buffaloes (bubalus bubalis) in calayan island, cagayan. Philipp J Vet Anim Sci. 44(1):59–67.

Prihandini PW, Tribudi YA, Nur D, Hariyono H, Putri A, Nafsina Z, Sari L. 2023. Biodiversity of Indonesian indigenous buffalo : First review of the status , challenges , and development opportunities. Vet World. 16(1):2217–2229. https://doi.org/www.doi.org/10.14202/vetworld.2023.2217-2229

Putra WPB, Said S, Arifin J. 2020. Principal component analysis (pca) of body measurements and body indices in the pasundan cows. Black Sea J Agric [Internet]. 3(1):49–55. https://orcid.org/0000-0002-1102-6447

Putri ARI, Budiarto A, Ciptadi G, Saputra R. 2022. Relationship Distance Analysis of Swamp Buffalo Bubalus bubalis Phenotype in Three Regions in East Java, Indonesia . Proc 9th Int Semin Trop Anim Prod (ISTAP 2021). 18(Istap 2021):227–230. https://doi.org/10.2991/absr.k.220207.047

Rahman M, Islam R, Hossain MK, Lucky NS, Zahan N. 2015. Paper Phenotypic Characterization of Indigenous Buffalo at Sylhet District. Int J Sci Res Agric Sci [Internet]. 2(1):1–6. //www.ijsrpub.com/ijsras

Raut PB, Sajid Ali S, Nandedkar P V., Chopade MM, Siddiqui MBA, Wankhede SM, Naveeth K. 2023. Principal component analysis of body biometric traits in Marathwadi buffaloes. Indian J Anim Sci. 93(2):226–231. https://doi.org/10.56093/ijans.v93i2.128668

de Rezende MPG, Ferraz PC, Carneiro PLS, Malhado CHM. 2017. Phenotypic diversity in buffalo cows of the Jafarabadi, Murrah, and Mediterranean breeds. Pesqui Agropecu Bras. 52(8):663–669. https://doi.org/10.1590/S0100-204X2017000800012

Rusdin M, Nafiu LO, Saili T, Aku AS, Rahman, Badaruddin R. 2022. The Analysis of Morphometric Index of Four Buffaloes Populations in Southeast Sulawesi, Indonesia. In: Proc Int Conf Improv Trop Anim Prod Food Secur (ITAPS 2021). Vol. 20. [place unknown]; p. 51–55. https://doi.org/10.2991/absr.k.220309.011

Sakar ÇM, Ünal ?, Ergiden Y, Zülkadir U. 2023. Comparison of Some Biometric Index Values in Anatolian Black Cattle Calves Raised in Different Locations. Large Anim Rev. 29(3):119–127.

Salamena JF, Papilaja BJ. 2010. Characterization and Genetic Relationships Analysis of Buffalo Maluku Province. J Indones Trop Anim Agric. 35(2):75–82.

Saputraa F, Jakaria, Anggraeni A, Sumantri C. 2020. Genetic Diversity of Indonesian Swamp Buffalo Based on Microsatellite Markers. Trop Anim Sci J. 43(3):191–196. https://doi.org/10.5398/tasj.2020.43.3.191

Setiawan DB. 2022. Identifikasi sifat karakteristik ternak kerbau (bubalus bubalis) yang dipelihara di kecamatan talang empat. J Ilmu Pertan Kelingi. 2(1):158–165. https://doi.org/10.58328/jipk.v2i1.66

Singh, K R, Kumar B, Kumar R, Kumar S, Mandal K. 2022. Phenotypic Characterisation and Multivariate Analysis of Biometric Traits of Diara Buffalo of Bihar , India. Biol Forum – An Int J. 12(1):51–57.

Suhardi, Putra WP., Wibowo A, Ismanto A, Rofik, Haris M., Safitri A, Ibrahim, Summpum P. 2022. Canonical Discriminant Analysis of Morphometric Variables of Swamp Buffalo (Bubalus bubalis) in Kalimantan Island. Int J Vet Sci. 11(1):23–27. https://doi.org/https://doi.org/10.47278/journal.ijvs/2021.067 Canonical

Suhardi S, Summpunn P, Duangjinda M, Wuthisuthimethavee S. 2022. Buffalo (bubalus bubalis) phenotypic diversity characterization reveals the need for improved performance based on quantitative and qualitative characteristics. Buffalo Bull. 41(3):373–390.

Suhardi, Summpunn P, Duangjinda M, Wuthisuthimethavee S. 2020. Phenotypic diversity characterization of Kalang and Thale Noi buffalo (Bubalus bubalis) in Indonesia and Thailand: Perspectives for the buffalo breeding development. Biodiversitas. 21(11):5128–5137. https://doi.org/10.13057/biodiv/d211118

Syaiful L., Maulida S. 2020. Identifikasi Ukuran Tubuh Sapi Bali dan Simbal ( Simmental-Bali ) di Kecamatan Luhak Nan Duo Kabupaten Pasaman Barat. J Sains Peternak Indones. 15(2):219–226.

Thalkar M., Chavan S., Kedari V., Khirari P. 2018. Morphological Characteristics of Purnathadi and Ellichpuri Strain of Nagpuri. Adv Life Sci. 4(11):4531–4537.

Vandre RK, Joshi S, Thakur MS, Tantia MS, Sharma R, Singh AP, Pandey A, Khare V, Kumar A, Sharma M, Khan A. 2022. Identification and morphological characterization of buffaloes in Mahakaushal region of Madhya Pradesh. Indian J Anim Sci. 92(3):318–322. https://doi.org/10.56093/ijans.v92i3.122262

Villamor LP, Cuanang AJE, Cailipan TPC, Paraguas AM, Flores EB, Villanueva MA, Balbin MM, Belotindos LP, Rellin FT. 2024. Population Structure, Morphology, and Health Assessment of Philippine Swamp Buffalo (Bubalus kerabau, Fitzinger, 1860) in Calayan Island, Cagayan. Ruminants. 4(4):556–564. https://doi.org/10.3390/ruminants4040039

Vohra V, Niranjan SK, Mishra AK, Jamuna V, Chopra A, Sharma N, Jeong DK. 2015. Phenotypic characterization and multivariate analysis to explain body conformation in lesser known buffalo (Bubalus bubalis) from North India. Asian-Australasian J Anim Sci. 28(3):311–317. https://doi.org/10.5713/ajas.14.0451

Vohra V, Singh M, Das R, Chopra A, Kataria RS. 2017. Multivariate analysis of biometric traits and their shared variance in Chhattisgarhi buffalo. Indian J Anim Sci. 87(7):864–870. https://doi.org/10.56093/ijans.v87i7.72255

Wilastra AS, Gushairiyanto G, Erina S, Depison D. 2021. Analisis Jarak Genetik Sapi Bali pada Tiga Kecamatan di Kabupaten Merangin Provinsi Jambi. J Peternak. 18(1):1–12. https://doi.org/10.24014/jupet.v18i1.10331

Yadav DK, Vijh RK. 2022. Morphological Standard of Murrah Buffalo of India based on Multivariate Analysis of the Phenotypic Traits. Indian J Anim Res. 56(1):109–115. https://doi.org/10.18805/IJAR.B-4313

Yeasmin MN, Khandokar MAMY, Tanni TSJ, Begum S. 2016. Comparative Study of the Morphometric Characteristics of Buffaloes in Institutional Herds of Bangladesh. Int J Innov Sci Eng Technol. 3(7):715–718.

Yendraliza, Rodiallah M, Zumarni, Elfawati, Hidayati, Kusnadi. 2021. Reproduction performance, morphometric and structure population of kuntu buffalo (Bubalis bubalis merr) in kampar district, riau, indonesia. Biodiversitas. 22(6):3370–3377. https://doi.org/10.13057/biodiv/d220644

Yulianty S, Gede Soma I, Nengah Wandia I. 2016. Keragaman Fenotipe Kerbau Lumpur (Bubalus bubalis) di Kabupaten Jembrana Bali: Warna Kulit dan Pusaran Rambut. Indones Med Veterinus. 5(2):119–128.

Yunusa AJ, Salako AE, Oladejo OA. 2013. Morphometric characterization of Nigerian indigenous sheep using multifactorial discriminant analysis. Int J Biodivers Conserv. 5(10):661–665. https://doi.org/10.5897/IJBC2013.0592

Yusnizar Y, Wilbe M, Herlino AO, Sumantri C, Noor RR, Boediono A, Andersson L, Andersson G. 2015. Microphthalmia-associated transcription factor mutations are associated with white-spotted coat color in swamp buffalo. Anim Genet. 46(6):676–682. https://doi.org/10.1111/age.12334

Zhang Y, Colli L, Barker JSF. 2020. Asian water buffalo: domestication, history and genetics. Anim Genet. 51(2):177–191. https://doi.org/10.1111/age.12911

Refbacks

  • There are currently no refbacks.

Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.